A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.
Identifieur interne : 000284 ( Main/Exploration ); précédent : 000283; suivant : 000285A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.
Auteurs : Artemis Rumbou [Allemagne] ; Thierry Candresse [France] ; Armelle Marais [France] ; Sebastien Theil [France] ; Juliane Langer [Allemagne] ; Risto Jalkanen [Finlande] ; Carmen Büttner [Allemagne]Source :
- PloS one [ 1932-6203 ] ; 2018.
Descripteurs français
- KwdFr :
- ADN viral (génétique), Analyse de séquence d'ADN (MeSH), Badnavirus (génétique), Betula (virologie), Cadres ouverts de lecture (génétique), Feuilles de plante (virologie), Génome viral (génétique), Maladies des plantes (virologie), Phylogenèse (MeSH), Protéines virales (génétique), Variation génétique (génétique).
- MESH :
- génétique : ADN viral, Badnavirus, Cadres ouverts de lecture, Génome viral, Protéines virales, Variation génétique.
- virologie : Betula, Feuilles de plante, Maladies des plantes.
- Analyse de séquence d'ADN, Phylogenèse.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Viral, Viral Proteins.
- genetics : Badnavirus, Genetic Variation, Genome, Viral, Open Reading Frames.
- virology : Betula, Plant Diseases, Plant Leaves.
- Phylogeny, Sequence Analysis, DNA.
Abstract
In declining birches (Betula sp.) from different European stands affected by the "birch leaf-roll disease" (BLRD) a novel virus is identified by means of RNA-Seq virome analysis. The virus represents a new member in the genus Badnavirus, family Caulimoviridae, tentatively named Birch leaf roll-associated virus (BLRaV) and it is the first badnavirus found to infect birch. Complete genome sequences (7,862-7,864 nucleotides) of three viral isolates of Finnish and German origin have been determined. The virus sequences show a typical badnavirus organization with three major open reading frames (ORFs) and a fourth potential ORF overlapping with the end of ORF3. ORFs 1-2-3 show low level of amino acid identity to the corresponding proteins encoded by other badnaviruses, reaching a maximum of 44% identity (ORF3). Grapevine vein-clearing virus appears as the closest badnavirus when considering the polymerase region. So far, we can exclude evidence for presence of endogenous BLRaV elements in the birch genome, while evidence for the episomal activity of BLRaV is provided. The viral population holds significant haplotype diversity, while co-infection by different BLRaV variants are observed in single hosts. BLRaV presence is associated with the BLRD in both silver (B. pendula) and downy birch (B. pubescens). These results challenge the earlier hypothesis of a causal role of Cherry leaf roll virus in BLRD. Further work is now needed to finally prove that BLRaV is the causal agent for the BLRD.
DOI: 10.1371/journal.pone.0193888
PubMed: 29494687
PubMed Central: PMC5833271
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.</title><author><name sortKey="Rumbou, Artemis" sort="Rumbou, Artemis" uniqKey="Rumbou A" first="Artemis" last="Rumbou">Artemis Rumbou</name><affiliation wicri:level="3"><nlm:affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Candresse, Thierry" sort="Candresse, Thierry" uniqKey="Candresse T" first="Thierry" last="Candresse">Thierry Candresse</name><affiliation wicri:level="1"><nlm:affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex</wicri:regionArea><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Marais, Armelle" sort="Marais, Armelle" uniqKey="Marais A" first="Armelle" last="Marais">Armelle Marais</name><affiliation wicri:level="1"><nlm:affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex</wicri:regionArea><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Theil, Sebastien" sort="Theil, Sebastien" uniqKey="Theil S" first="Sebastien" last="Theil">Sebastien Theil</name><affiliation wicri:level="1"><nlm:affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex</wicri:regionArea><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Langer, Juliane" sort="Langer, Juliane" uniqKey="Langer J" first="Juliane" last="Langer">Juliane Langer</name><affiliation wicri:level="3"><nlm:affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Jalkanen, Risto" sort="Jalkanen, Risto" uniqKey="Jalkanen R" first="Risto" last="Jalkanen">Risto Jalkanen</name><affiliation wicri:level="1"><nlm:affiliation>Rovaniemi Unit, Finnish Forest Research Institute (Metla), Natural Resources Institute, Luke, Rovaniemi, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Rovaniemi Unit, Finnish Forest Research Institute (Metla), Natural Resources Institute, Luke, Rovaniemi</wicri:regionArea><wicri:noRegion>Rovaniemi</wicri:noRegion></affiliation></author><author><name sortKey="Buttner, Carmen" sort="Buttner, Carmen" uniqKey="Buttner C" first="Carmen" last="Büttner">Carmen Büttner</name><affiliation wicri:level="3"><nlm:affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29494687</idno><idno type="pmid">29494687</idno><idno type="doi">10.1371/journal.pone.0193888</idno><idno type="pmc">PMC5833271</idno><idno type="wicri:Area/Main/Corpus">000263</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000263</idno><idno type="wicri:Area/Main/Curation">000263</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000263</idno><idno type="wicri:Area/Main/Exploration">000263</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.</title><author><name sortKey="Rumbou, Artemis" sort="Rumbou, Artemis" uniqKey="Rumbou A" first="Artemis" last="Rumbou">Artemis Rumbou</name><affiliation wicri:level="3"><nlm:affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Candresse, Thierry" sort="Candresse, Thierry" uniqKey="Candresse T" first="Thierry" last="Candresse">Thierry Candresse</name><affiliation wicri:level="1"><nlm:affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex</wicri:regionArea><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Marais, Armelle" sort="Marais, Armelle" uniqKey="Marais A" first="Armelle" last="Marais">Armelle Marais</name><affiliation wicri:level="1"><nlm:affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex</wicri:regionArea><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Theil, Sebastien" sort="Theil, Sebastien" uniqKey="Theil S" first="Sebastien" last="Theil">Sebastien Theil</name><affiliation wicri:level="1"><nlm:affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex</wicri:regionArea><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion><wicri:noRegion>Villenave d'Ornon Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Langer, Juliane" sort="Langer, Juliane" uniqKey="Langer J" first="Juliane" last="Langer">Juliane Langer</name><affiliation wicri:level="3"><nlm:affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Jalkanen, Risto" sort="Jalkanen, Risto" uniqKey="Jalkanen R" first="Risto" last="Jalkanen">Risto Jalkanen</name><affiliation wicri:level="1"><nlm:affiliation>Rovaniemi Unit, Finnish Forest Research Institute (Metla), Natural Resources Institute, Luke, Rovaniemi, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Rovaniemi Unit, Finnish Forest Research Institute (Metla), Natural Resources Institute, Luke, Rovaniemi</wicri:regionArea><wicri:noRegion>Rovaniemi</wicri:noRegion></affiliation></author><author><name sortKey="Buttner, Carmen" sort="Buttner, Carmen" uniqKey="Buttner C" first="Carmen" last="Büttner">Carmen Büttner</name><affiliation wicri:level="3"><nlm:affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Badnavirus (genetics)</term><term>Betula (virology)</term><term>DNA, Viral (genetics)</term><term>Genetic Variation (genetics)</term><term>Genome, Viral (genetics)</term><term>Open Reading Frames (genetics)</term><term>Phylogeny (MeSH)</term><term>Plant Diseases (virology)</term><term>Plant Leaves (virology)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN viral (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Badnavirus (génétique)</term><term>Betula (virologie)</term><term>Cadres ouverts de lecture (génétique)</term><term>Feuilles de plante (virologie)</term><term>Génome viral (génétique)</term><term>Maladies des plantes (virologie)</term><term>Phylogenèse (MeSH)</term><term>Protéines virales (génétique)</term><term>Variation génétique (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Viral</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Badnavirus</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Open Reading Frames</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN viral</term><term>Badnavirus</term><term>Cadres ouverts de lecture</term><term>Génome viral</term><term>Protéines virales</term><term>Variation génétique</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Betula</term><term>Feuilles de plante</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Betula</term><term>Plant Diseases</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In declining birches (Betula sp.) from different European stands affected by the "birch leaf-roll disease" (BLRD) a novel virus is identified by means of RNA-Seq virome analysis. The virus represents a new member in the genus Badnavirus, family Caulimoviridae, tentatively named Birch leaf roll-associated virus (BLRaV) and it is the first badnavirus found to infect birch. Complete genome sequences (7,862-7,864 nucleotides) of three viral isolates of Finnish and German origin have been determined. The virus sequences show a typical badnavirus organization with three major open reading frames (ORFs) and a fourth potential ORF overlapping with the end of ORF3. ORFs 1-2-3 show low level of amino acid identity to the corresponding proteins encoded by other badnaviruses, reaching a maximum of 44% identity (ORF3). Grapevine vein-clearing virus appears as the closest badnavirus when considering the polymerase region. So far, we can exclude evidence for presence of endogenous BLRaV elements in the birch genome, while evidence for the episomal activity of BLRaV is provided. The viral population holds significant haplotype diversity, while co-infection by different BLRaV variants are observed in single hosts. BLRaV presence is associated with the BLRD in both silver (B. pendula) and downy birch (B. pubescens). These results challenge the earlier hypothesis of a causal role of Cherry leaf roll virus in BLRD. Further work is now needed to finally prove that BLRaV is the causal agent for the BLRD.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29494687</PMID><DateCompleted><Year>2018</Year><Month>06</Month><Day>25</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>14</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>13</Volume><Issue>3</Issue><PubDate><Year>2018</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.</ArticleTitle><Pagination><MedlinePgn>e0193888</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0193888</ELocationID><Abstract><AbstractText>In declining birches (Betula sp.) from different European stands affected by the "birch leaf-roll disease" (BLRD) a novel virus is identified by means of RNA-Seq virome analysis. The virus represents a new member in the genus Badnavirus, family Caulimoviridae, tentatively named Birch leaf roll-associated virus (BLRaV) and it is the first badnavirus found to infect birch. Complete genome sequences (7,862-7,864 nucleotides) of three viral isolates of Finnish and German origin have been determined. The virus sequences show a typical badnavirus organization with three major open reading frames (ORFs) and a fourth potential ORF overlapping with the end of ORF3. ORFs 1-2-3 show low level of amino acid identity to the corresponding proteins encoded by other badnaviruses, reaching a maximum of 44% identity (ORF3). Grapevine vein-clearing virus appears as the closest badnavirus when considering the polymerase region. So far, we can exclude evidence for presence of endogenous BLRaV elements in the birch genome, while evidence for the episomal activity of BLRaV is provided. The viral population holds significant haplotype diversity, while co-infection by different BLRaV variants are observed in single hosts. BLRaV presence is associated with the BLRD in both silver (B. pendula) and downy birch (B. pubescens). These results challenge the earlier hypothesis of a causal role of Cherry leaf roll virus in BLRD. Further work is now needed to finally prove that BLRaV is the causal agent for the BLRD.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rumbou</LastName><ForeName>Artemis</ForeName><Initials>A</Initials><Identifier Source="ORCID">0000-0002-7237-7355</Identifier><AffiliationInfo><Affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Candresse</LastName><ForeName>Thierry</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marais</LastName><ForeName>Armelle</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Theil</LastName><ForeName>Sebastien</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Equipe Virologie, UMR 1332 BFP, French National Institute for Agricultural Research (INRA), Villenave d'Ornon Cedex, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Langer</LastName><ForeName>Juliane</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jalkanen</LastName><ForeName>Risto</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Rovaniemi Unit, Finnish Forest Research Institute (Metla), Natural Resources Institute, Luke, Rovaniemi, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Büttner</LastName><ForeName>Carmen</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Division Phytomedicine, Albrecht Daniel Thaer-Institute, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Berlin, Germany.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>03</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004279">DNA, Viral</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014764">Viral Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>PLoS One. 2018 Jul 6;13(7):e0200555</RefSource><PMID Version="1">29979791</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D019195" MajorTopicYN="N">Badnavirus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029662" MajorTopicYN="N">Betula</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016366" MajorTopicYN="N">Open Reading Frames</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>12</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>02</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>3</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>3</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>6</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29494687</ArticleId><ArticleId IdType="doi">10.1371/journal.pone.0193888</ArticleId><ArticleId IdType="pii">PONE-D-17-44140</ArticleId><ArticleId IdType="pmc">PMC5833271</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Phytopathology. 2011 Sep;101(9):1081-90</Citation><ArticleIdList><ArticleId IdType="pubmed">21554183</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2009 Jul;10(4):537-45</Citation><ArticleIdList><ArticleId IdType="pubmed">19523106</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2007 Jul;35(Web Server issue):W43-6</Citation><ArticleIdList><ArticleId IdType="pubmed">17452344</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2005 Feb;86(Pt 2):511-20</Citation><ArticleIdList><ArticleId IdType="pubmed">15659772</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2013 Jun;22(11):3098-111</Citation><ArticleIdList><ArticleId IdType="pubmed">23167599</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2014 Aug 8;188:90-6</Citation><ArticleIdList><ArticleId IdType="pubmed">24717426</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2006 Mar;80(5):2453-62</Citation><ArticleIdList><ArticleId IdType="pubmed">16474152</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 Jul 24;10(7):e0134147</Citation><ArticleIdList><ArticleId IdType="pubmed">26207896</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2015;53:425-44</Citation><ArticleIdList><ArticleId IdType="pubmed">26047558</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2006 Oct;11(10):485-91</Citation><ArticleIdList><ArticleId IdType="pubmed">16949329</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Microbiol. 2017 Jan 24;8:45</Citation><ArticleIdList><ArticleId IdType="pubmed">28174561</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2015 May 4;203:47-55</Citation><ArticleIdList><ArticleId IdType="pubmed">25791736</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytopathology. 2015 Jun;105(6):716-27</Citation><ArticleIdList><ArticleId IdType="pubmed">26056847</ArticleId></ArticleIdList></Reference><Reference><Citation>Viruses. 2016 Jun 22;8(6):</Citation><ArticleIdList><ArticleId IdType="pubmed">27338451</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2010 Jul;84(14):7346-59</Citation><ArticleIdList><ArticleId IdType="pubmed">20427523</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2013 Oct;14(8):759-71</Citation><ArticleIdList><ArticleId IdType="pubmed">23763585</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Finlande</li><li>France</li></country><region><li>Berlin</li></region><settlement><li>Berlin</li></settlement></list><tree><country name="Allemagne"><region name="Berlin"><name sortKey="Rumbou, Artemis" sort="Rumbou, Artemis" uniqKey="Rumbou A" first="Artemis" last="Rumbou">Artemis Rumbou</name></region><name sortKey="Buttner, Carmen" sort="Buttner, Carmen" uniqKey="Buttner C" first="Carmen" last="Büttner">Carmen Büttner</name><name sortKey="Langer, Juliane" sort="Langer, Juliane" uniqKey="Langer J" first="Juliane" last="Langer">Juliane Langer</name></country><country name="France"><noRegion><name sortKey="Candresse, Thierry" sort="Candresse, Thierry" uniqKey="Candresse T" first="Thierry" last="Candresse">Thierry Candresse</name></noRegion><name sortKey="Marais, Armelle" sort="Marais, Armelle" uniqKey="Marais A" first="Armelle" last="Marais">Armelle Marais</name><name sortKey="Theil, Sebastien" sort="Theil, Sebastien" uniqKey="Theil S" first="Sebastien" last="Theil">Sebastien Theil</name></country><country name="Finlande"><noRegion><name sortKey="Jalkanen, Risto" sort="Jalkanen, Risto" uniqKey="Jalkanen R" first="Risto" last="Jalkanen">Risto Jalkanen</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/GrapevineDiseaseV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000284 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000284 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= GrapevineDiseaseV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:29494687
|texte= A novel badnavirus discovered from Betula sp. affected by birch leaf-roll disease.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29494687" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrapevineDiseaseV1
| This area was generated with Dilib version V0.6.37. |  |